Package index

All functions

annotateProteinInfoFromIndra()

Annotate Protein Information from Indra

.populateHgncIdsInDataFrame()

Populate HGNC IDs in Data Frame

.populateHgncNamesInDataFrame()

Populate HGNC Names in Data Frame

.populateKinaseInfoInDataFrame()

Populate Kinase Info in Data Frame

.populatePhophataseInfoInDataFrame()

Populate Phosphatase Info in Data Frame

.populateTranscriptionFactorInfoInDataFrame()

Populate Transcription Factor Info in Data Frame

.populateUniprotIdsInDataFrame()

Populate Uniprot IDs in Data Frame

.validateAnnotateProteinInfoFromIndraInput()

Validate Annotate Protein Info Input

exportNetworkToHTML()

Export network data with Cytoscape visualization

generateCytoscapeConfig()

Generate Cytoscape visualization configuration

generateJavaScriptCode()

Generate JavaScript code from Cytoscape configuration

getPathwaysFromIndra()

Get pathways ranked on relevance from INDRA DB

getSubnetworkFromIndra()

Get subnetwork from INDRA database

previewNetworkInBrowser()

Preview network in browser

visualizeNetworks()

Create visualization of network