Package index

All functions

annotateProteinInfoFromIndra()

Annotate Protein Information from Indra

cytoscapeNetwork()

Render a Cytoscape network visualisation

cytoscapeNetworkOutput()

Shiny output binding for cytoscapeNetwork

.populateHgncIdsInDataFrame()

Populate HGNC IDs in Data Frame

.populateHgncNamesInDataFrame()

Populate HGNC Names in Data Frame

.populateKinaseInfoInDataFrame()

Populate Kinase Info in Data Frame

.populatePhophataseInfoInDataFrame()

Populate Phosphatase Info in Data Frame

.populateTranscriptionFactorInfoInDataFrame()

Populate Transcription Factor Info in Data Frame

.populateUniprotIdsInDataFrame()

Populate Uniprot IDs in Data Frame

.validateAnnotateProteinInfoFromIndraInput()

Validate Annotate Protein Info Input

exportNetworkToHTML()

Export network data with Cytoscape visualization

filterSubnetworkByContext()

Filter a subnetwork by contextual relevance

getSubnetworkFromIndra()

Get subnetwork from INDRA database

previewNetworkInBrowser()

Preview network in browser

renderCytoscapeNetwork()

Render a Cytoscape network in a Shiny application. This function is used to render a Cytoscape network visualization within a Shiny application.