Export network data with Cytoscape visualization — exportNetworkToHTML • MSstatsBioNet

Convenience function that takes nodes and edges data directly and creates both the configuration and HTML export in one step.

Usage

exportNetworkToHTML(
  nodes,
  edges,
  filename = "network_visualization.html",
  displayLabelType = "id",
  nodeFontSize = 12,
  ...
)

nodes: Data frame with at minimum an id column. Optional columns: logFC (numeric), hgncName (character), Site (character, underscore-separated PTM site list).
edges: Data frame with columns source, target, interaction. Optional: site, evidenceLink.
filename: Output HTML filename
displayLabelType: "id" (default) or "hgncName" – controls which column is used as the visible node label.
nodeFontSize: Font size (px) for node labels. Default 12.
...: Additional arguments passed to exportCytoscapeToHTML()

Invisibly returns the file path of the created HTML file