Optimize a given criterion to estimate protein abundances

Optimize a given criterion to estimate protein abundances

Usage

summarizeProteinsClusterSingleRun(
  feature_data,
  weights,
  norm,
  norm_parameter,
  use_shared
)

Arguments

feature_data

data.table in MSstatsTMT format. See also the Details section

weights

data.table with weights.

norm

"p_norm" or "Huber"

norm_parameter

p for norm=="p_norm", M for norm=="Huber"

use_shared

if TRUE, shared peptides will be used.