Get constraints for weights — getWeightsConstraints • MSstatsWeightedSummary

Get constraints for weights

Usage

getWeightsConstraints(
  params_full,
  design_matrix,
  weights_mode,
  cols,
  protein_cols,
  psms_cols
)

Arguments

params_full: object generated by CVXR::Variables
design_matrix: design matrix for weights optimization
weights_mode: "contributions" for "sum to one" and "non-negative" conditions, "probabilities" for only "non-negative" condition.
cols: column names of the design matrix
protein_cols: protein names extracted from column names
psms_cols: feature names extracted from column names