This dataset was provided by the FragPipe team at the Nesvilab. It was processed using Philosopher and targeted Phosphorylation.
Examples
head(fragpipe_input_protein)
#> Spectrum.Name
#> 1 16CPTAC_CCRCC_W_JHU_20180322_LUMOS_f01.03785.03785.3
#> 2 16CPTAC_CCRCC_W_JHU_20180322_LUMOS_f01.04553.04553.3
#> 3 16CPTAC_CCRCC_W_JHU_20180322_LUMOS_f01.05163.05163.3
#> 4 16CPTAC_CCRCC_W_JHU_20180322_LUMOS_f01.05368.05368.2
#> 5 16CPTAC_CCRCC_W_JHU_20180322_LUMOS_f01.06388.06388.3
#> 6 16CPTAC_CCRCC_W_JHU_20180322_LUMOS_f01.09515.09515.2
#> Spectrum.File Peptide.Sequence
#> 1 16CPTAC_CCRCC_W_JHU_20180322_LUMOS_f01.mzML ANGMELDGRR
#> 2 16CPTAC_CCRCC_W_JHU_20180322_LUMOS_f01.mzML EEMDDQDK
#> 3 16CPTAC_CCRCC_W_JHU_20180322_LUMOS_f01.mzML ANGMELDGRR
#> 4 16CPTAC_CCRCC_W_JHU_20180322_LUMOS_f01.mzML EYEQDQSSSR
#> 5 16CPTAC_CCRCC_W_JHU_20180322_LUMOS_f01.mzML DRDTQNLQAQEEER
#> 6 16CPTAC_CCRCC_W_JHU_20180322_LUMOS_f01.mzML EEMDDQDK
#> Modified.Peptide.Sequence Probability Charge Protein.Start Protein.End Gene
#> 1 ANGM[147]ELDGRR 0.8947 3 180 189 TRA2A
#> 2 n[230]EEM[147]DDQDK 0.8677 3 428 435 THRAP3
#> 3 0.9888 3 180 189 TRA2A
#> 4 n[230]EYEQDQSSSR 1.0000 2 435 444 ZC3H13
#> 5 n[230]DRDTQNLQAQEEER 1.0000 3 166 179 SNIP1
#> 6 n[230]EEMDDQDK 1.0000 2 428 435 THRAP3
#> Mapped.Genes Protein Protein.ID Mapped.Proteins
#> 1 TRA2B sp|Q13595|TRA2A_HUMAN Q13595 sp|P62995|TRA2B_HUMAN
#> 2 sp|Q9Y2W1|TR150_HUMAN Q9Y2W1
#> 3 TRA2B sp|Q13595|TRA2A_HUMAN Q13595 sp|P62995|TRA2B_HUMAN
#> 4 sp|Q5T200|ZC3HD_HUMAN Q5T200
#> 5 sp|Q8TAD8|SNIP1_HUMAN Q8TAD8
#> 6 sp|Q9Y2W1|TR150_HUMAN Q9Y2W1
#> Protein.Description Is.Unique Purity Intensity
#> 1 Transformer-2 protein homolog alpha false 0.66 11404057
#> 2 Thyroid hormone receptor-associated protein 3 true 1.00 214722976
#> 3 Transformer-2 protein homolog alpha false 1.00 0
#> 4 Zinc finger CCCH domain-containing protein 13 true 1.00 0
#> 5 Smad nuclear-interacting protein 1 true 1.00 23654240
#> 6 Thyroid hormone receptor-associated protein 3 true 1.00 137334144
#> Channel.126 Channel.127N Channel.127C Channel.128N Channel.128C Channel.129N
#> 1 0.00 0.00 0.00 0.00 0.00 0.00
#> 2 169649.80 128647.68 211484.62 217940.97 285032.38 386665.06
#> 3 0.00 0.00 0.00 0.00 0.00 0.00
#> 4 27110.14 27206.84 18804.96 31722.93 46041.87 56579.66
#> 5 34456.11 45179.79 32160.84 45215.09 75652.51 31730.62
#> 6 540481.56 393964.88 647020.00 672371.25 932212.88 1208951.00
#> Channel.129C Channel.130N Channel.130C Channel.131N
#> 1 0.00 0.00 0.00 0.00
#> 2 214397.91 235756.58 217907.38 128019.87
#> 3 0.00 0.00 0.00 0.00
#> 4 37022.87 38246.96 35628.89 29679.23
#> 5 46960.10 51399.19 38244.52 36727.02
#> 6 665127.81 719719.12 749849.31 429616.81