This dataset was provided by the FragPipe team at the Nesvilab. It was processed using Philosopher and targeted Phosphorylation.
Examples
head(fragpipe_input)
#> Spectrum.Name
#> 1 16CPTAC_CCRCC_P_JHU_20180326_LUMOS_f01.02743.02743.4
#> 2 16CPTAC_CCRCC_P_JHU_20180326_LUMOS_f01.02755.02755.4
#> 3 16CPTAC_CCRCC_P_JHU_20180326_LUMOS_f01.02812.02812.3
#> 4 16CPTAC_CCRCC_P_JHU_20180326_LUMOS_f01.02913.02913.3
#> 5 16CPTAC_CCRCC_P_JHU_20180326_LUMOS_f01.02920.02920.5
#> 6 16CPTAC_CCRCC_P_JHU_20180326_LUMOS_f01.02975.02975.3
#> Spectrum.File Peptide.Sequence
#> 1 16CPTAC_CCRCC_P_JHU_20180326_LUMOS_f01.mzML RRHSHSHSPMSTR
#> 2 16CPTAC_CCRCC_P_JHU_20180326_LUMOS_f01.mzML RHSHSHSPMSTR
#> 3 16CPTAC_CCRCC_P_JHU_20180326_LUMOS_f01.mzML HSHSHSPMSTR
#> 4 16CPTAC_CCRCC_P_JHU_20180326_LUMOS_f01.mzML HTRDSEAQR
#> 5 16CPTAC_CCRCC_P_JHU_20180326_LUMOS_f01.mzML QHREPSEQEHRR
#> 6 16CPTAC_CCRCC_P_JHU_20180326_LUMOS_f01.mzML RRSTSPDHTR
#> Modified.Peptide.Sequence Probability Charge Protein.Start
#> 1 n[230]RRHSHS[167]HS[167]PM[147]STR 0.9953 4 92
#> 2 n[230]RHSHS[167]HS[167]PM[147]STR 0.9962 4 93
#> 3 n[230]HSHS[167]HS[167]PM[147]STR 0.9957 3 94
#> 4 n[230]HTRDS[167]EAQR 0.9778 3 6
#> 5 n[230]QHREPS[167]EQEHRR 0.9979 5 123
#> 6 n[230]RRS[167]T[181]SPDHTR 0.9976 3 636
#> Protein.End Gene Mapped.Genes Protein Protein.ID
#> 1 104 TRA2B sp|P62995|TRA2B_HUMAN P62995
#> 2 104 TRA2B sp|P62995|TRA2B_HUMAN P62995
#> 3 104 TRA2B sp|P62995|TRA2B_HUMAN P62995
#> 4 14 STOM sp|P27105|STOM_HUMAN P27105
#> 5 134 SNIP1 sp|Q8TAD8|SNIP1_HUMAN Q8TAD8
#> 6 645 AKAP17A sp|Q02040|AK17A_HUMAN Q02040
#> Mapped.Proteins Protein.Description Is.Unique Purity Intensity
#> 1 Transformer-2 protein homolog beta true 0.00 0
#> 2 Transformer-2 protein homolog beta true 1.00 93998240
#> 3 Transformer-2 protein homolog beta true 1.00 58713048
#> 4 Stomatin true 0.53 0
#> 5 Smad nuclear-interacting protein 1 true 0.84 32706532
#> 6 A-kinase anchor protein 17A true 1.00 28102432
#> M.15.9949 STY.79.966331
#> 1 RRHSHSHSPM(1.0000)STR RRHS(0.1780)HS(0.8463)HS(0.8392)PMS(0.0709)T(0.0656)R
#> 2 RHSHSHSPM(1.0000)STR RHS(0.1497)HS(0.8741)HS(0.8698)PMS(0.0523)T(0.0542)R
#> 3 HSHSHSPM(1.0000)STR HS(0.0582)HS(0.9325)HS(0.9327)PMS(0.0387)T(0.0380)R
#> 4 HT(0.3995)RDS(0.6005)EAQR
#> 5 QHREPS(1.0000)EQEHRR
#> 6 RRS(0.7370)T(0.7512)S(0.4257)PDHT(0.0862)R
#> Channel.126 Channel.127N Channel.127C Channel.128N Channel.128C Channel.129N
#> 1 5578.652 8280.212 7034.635 10747.431 14872.24 17204.29
#> 2 19045.867 25291.979 38326.629 34385.059 42117.77 72897.84
#> 3 18498.551 24321.078 33518.191 31881.815 36766.03 60230.07
#> 4 13825.080 15933.881 8398.121 8001.169 12493.29 22851.57
#> 5 13345.636 24715.256 11790.443 18234.275 34780.09 12546.47
#> 6 15176.378 8430.135 14684.991 19511.988 38792.40 58184.98
#> Channel.129C Channel.130N Channel.130C Channel.131N
#> 1 15443.60 11442.942 12985.56 11235.75
#> 2 33277.25 50290.703 49428.89 26749.50
#> 3 31366.80 41944.098 47435.18 20533.39
#> 4 11001.78 8394.632 10014.59 14173.92
#> 5 29433.08 18376.287 14489.56 16896.90
#> 6 26905.22 26273.547 24920.71 15653.74