How are my selected entities connected to each other?

Asks which edges connect the selected entities directly, with no other nodes added. Only entities passed to get_network() as include_entities are added.

Usage

subnetwork_query()

Value

a SubnetworkQuery object, to pass to get_network()

Details

Uses the rows of entities with included_in_query = TRUE. Each node the backend returns is matched against all rows, so that it carries its statistics. Edges get query_type = "subnetwork". For INDRA, the query goes to CoGEx indra_subnetwork_relations, and takes fewer than 400 groundings (backend_capabilities(indra_backend())$max_nodes).

See also

network_queries for the other questions

Examples

subnetwork_query()
#> An object of class "SubnetworkQuery"
#> <S4 Type Object>