Generate Cytoscape visualization configuration

This function creates a complete Cytoscape configuration object that can be used to render a network visualization. It's decoupled from any specific UI framework.

Usage

generateCytoscapeConfig(
  nodes,
  edges,
  display_label_type = "id",
  container_id = "network-cy",
  event_handlers = NULL,
  layout_options = NULL
)

Arguments

nodes

List of nodes from getSubnetworkFromIndra

edges

List of edges from getSubnetworkFromIndra

display_label_type

column of nodes table for displaying node names

container_id

ID of the HTML container element (default: 'network-cy')

event_handlers

Optional list of event handler configurations

layout_options

Optional list of layout configuration options

Value

List containing: - elements: Combined node and edge elements - style: Cytoscape style configuration - layout: Layout configuration - container_id: Container element ID - js_code: Complete JavaScript code (for backward compatibility)