Populate entity grounding columns via Gilda

Grounds each GlobalProtein text through Gilda. For "Hgnc_Name" the response is filtered to HGNC candidates (and restricted to human via the organism filter); for "Metabolite" every grounding namespace Gilda returns is kept. Multi-grounded inputs are semicolon-joined and positionally aligned across all three Entity columns.

Usage

.populateEntityInformationWithGilda(df, proteinIdType)

Arguments

df

A data frame with a GlobalProtein column.

proteinIdType

One of "Hgnc_Name" or "Metabolite".

Value

The data frame with EntityNamespace, EntityId, EntityName set for resolved rows.