Populate Entity Information in Data Frame

Initialises the three entity grounding columns and dispatches to the appropriate populator: the INDRA cogex path for UniProt-based inputs, the Gilda grounding path for name-based inputs (HGNC name / metabolite).

Usage

.populateEntityInformationInDataFrame(df, proteinIdType)

Arguments

df

A data frame containing protein information.

proteinIdType

A character string specifying the type of protein ID.

Value

A data frame with populated entity grounding columns.